How to reduce the contig number and errorprone messages in denovo assembly using SPAdes?
How to get lesser contig number through SPAdes assembly. Plateform- illumina ,pair end reads 2*150 Also I am getting warnings as follows:
1. Estimated mean insert size 152.79 is very small compared to read length 150
2.The determined erroneous connection coverage threshold may be determined improperly
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lakhujanivijay
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sangita.sarma71991 •
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sangita.sarma71991 •
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Hello sangita.sarma71991,
Please use the formatting bar (especially the
codeoption) to present your post better. I've done it for you this time.Also, you should add other information as well like
organism name
expected genome size
kmer used in assembly
total data that you have
coverage of the data
Thank you!