WGCNA threshold values
Hi Everyone,
I am using WGCNA for generating modules for my non-coding RNAseq data
I doing a separate analysis for 13 different tissues. My question is what soft threshold value will be ideal and if I am using different threshold value for different tissues will it affect my overall analysis.
My sample size range is between 80-500 in different tissues.
Thank you
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Kevin Blighe
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pr2009 •
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pr2009 •
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My question is what soft threshold value will be ideal
Generally choose the first value that passed 0.9 on the y-axis. This is, more often than not, 6 or 7.
Kevin
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