Accession numbers of e coli unassembled genomes that I can use for practice
Dear all,
Please I need links to accession numbers of E coli unassembled genomes that I can use for assembly practice.
Thank you in advance
Kind regards,
Rotimi
genome
sequence
• 808 views
•
link
written
by
dadarotimi •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
retrieve assembly accession from genome accession
written by Cynthia14159 •I have a file containing the list of genome accession numbers (JADIXX000000000) , and I need to get the corresponding assembly accession numbers(GCA_016705575). Which database …
-
How to retrieve the corresponding genome assembly accession ID from a nucleotide accession ID using…
written by Mani •I have a file containing the list of nucleotide sequence accession numbers and I need to get the corresponding assembly accession numbers using Entrez command …
-
Help searching homologs in a genome
written by ANDRES FELIPE •I'm trying to search homologs for a query sequence in a list of genomes given their accesion numbers obtained from ref seq nucleotides database. I …
-
Dock image for transcriptomics assembly
written by judhenaosa •Dear all. I need to do the assembly by reference of a raw illumina transcriptomics. However, the server I use needs to upload all the …
-
How to link the assembly accession with the chromosome accession for prokaryotic representative gen…
written by wangdp123Dear colleague, I am working on the analysis of prokaryotic genomes from NCBI genome database. 1. Downloaded a file called prok_representative_genomes.txt from the following file …
-
Batch rename RefSeq assembly for the corresponding organism name
written by genomes_and_MGEs •Hey everyone, I just downloaded several genomes from NCBI assembly. Let's say I downloaded all E. coli genomes. After unzipping all files, I'll have several …
-
Downloading multiple samples with GEO accesion numbers
written by osiemen •Dear all, I have GEO accession numbers for 850 samples I would like to download. What is the easiest way to download a bulk of …
-
Generate local blast database with RefSeq bacteria AND taxonomy
written by even.s.riiser •Dear all, I would like to be able to create my own custom local blast database, as this may be relevant in many different situations …
-
Problems with using WebACT to create crunch files for ACT
written by dadarotimi •I have been trying to create crunch files of two prokaryotic genome so I can compare both genomes using Artemis Comparison Tool (ACT). However, all …
-
Antibiotic targets in bacteria
written by TS •Dear biostars forum, I am currently analysing the effects of various antibiotic treatments on E. coli. The different E. coli were separatly treated with e.g. …
If you search SRA or EBI-ENA there would be plenty of results. Here is one example from SRA.