Locating promoters and RBS using ORF finder in NCBI
Hi folks, am have a sequence that orf has has traqnslated and am trying to locate promoters and RBS in the sequence. Have located start codon methionine but how do I find the above?
sequencing
• 1,826 views
•
link
written
by
pauric.hennessy •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Embedded stop codon in translated nucleotide sequences in DAMBE
written by Fathima •I am using DAMBE to convert the alignment of nucleotide sequences to a PAML File, after trimming the terminal stop codon and the start codon …
-
How to remove introns in a specific nucleotide sequence
written by LeeLee •I am using ribotricer software to search for ORF in ribo-seq data. This software will return the start and end positions of the ORF on …
-
Lengths of UTR3, UTR5 and ORF from gtf file
written by bio_elle •I would like to find the lengths of UTR3, UTR5 and ORF regions for each transcript of protein coding genes. My plan was to find …
-
ORF reading in Python
written by a.lathifbt •I am trying to read ORF from a list of sequences and identify the one with maximum length and correspond it to the sequence and …
-
Extracting promoter sequence with GenomicFeatures ?
written by lokraj2003I am trying to extract promoter sequence of a non-model organism (Orf virus). I used flank function from GenomicFeatures to extract 50 base pairs upstream …
-
Why does bacterial codon table translate GTG start codon to V and not M?
written by bioinfo2345 •Consider the following sequence: >sequence GTGACCGGCAGCGCGGCCACGATCCGCCCGGCCAAGGCGGCCGATGCGGTCGCGTGGGCG CAGCTGCGTCTGGGCCTGTGGCCCGATGCCGATGATCCGCTGGAGACGCTGGTGGCGGCG CTGGCCGAGGACGCAGGTGCGGTTTTCCTGGCGTGTGCAGCGGGTGGCCAGGCGATCGGC TTCGCCGAAGTGCGCCTGCGCCATGACTACGT In this bacterial organism, GTG is an alternative start codon. It means that it can initiate …
-
Finding ORF from a genome with a partial nucleotide sequence
written by Karyo •Hi, I am looking for a tool or a way that I can find a full ORF/gene that starts from a start codon, ATG, and …
-
Reannotating a gene: Identifying translation and transcription start sites
written by rh5118 •Hi all - I'm working on a particular gene in Plasmodium falciparum that I have recently shown is misannotated in the reference genome. The current …
-
Are there tools for finding ORF for multiple sequences
written by KurbanHello guys, I have a several thousands of de novo assembled sequences form RNA-seq, some of them are annotated and some them are not. If …
-
Python- Find ORF in sequence, compound return statement
written by st.ph.nHi all. I'm working on Python script that find ORF for a sequence, within a function of code. I hope this is well explained enough …