how to create pedigree file in PLINK
Hi,
How can I create pedigree file(.ped) in PLINK, will it traceback old pedigree information too.
sequencing
• 1,935 views
•
link
written
by
swati051 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Denovo variants
written by shivangi.agarwal800Hi Guys, Can anyone let me know the protocol/steps to identify Denovo variants from input files as father.gvcf, mother.gvcf & proband.gvcf (trio) ? I am …
-
PLINK ped file
written by loy_loy •Hi everyone, I am trying to run a PLINK analysis with GWAS summary stats. I want to filter the data to get a selection of …
-
Haplotype inference algorithms in Pedigrees
written by S. Roa •Hello everyone! I have a complex cattle pedigree in a .ped file, plink formatted, and I succesfully ran it in PedPhase. Pedigree: 1 family, 79 …
-
plink file format - covariate file
written by aj291995 •hi everyone, can anyone help me in plink i am having .ped and .map file , i already create bfile (bed+bim+fam), i also want to …
-
traceback pedigree information
written by swati051 •Hi, How can we traceback pedigree information ? In my work, I got 10215 animal data containing Animal ID, dam sire barcode along with sex, …
-
Is there a way to construct a pedigree using RADseq data?
written by beausoleilmoI tried to find a paper showing how to do this, but I found nothing about ˙øw to create a genetic pedigree using neutral markers. …
-
linkage disequilibrium of snps using plink
written by 14311a2301 •How to create map and ped files for plink from the data I retrieved from dbsnp? The data I got from dbsnp has more that …
-
how to add pedigree info into VCF
written by CrazyBMy VCF does not contain pedigree info and as such when running `PLINK`, it does not compute. `VCFtool` can convert VCF to `.ped` and `.map` …
-
How to create reference allele file in plink? (~50 SNPs)
written by eybHow to create reference allele file? How it should look like? I need to convert plink ped/map files to VCF and reference allele file is …
-
PED & MAP file extension
written by Rakan •Hi everyone, I'm trying to upload the PED & MAP file (tab-delimited file) into gplink to run the association test but it doesn't seem that …
You can technically create the PED file yourself, if you wish. What data have you currently got? - please be specific and show examples if you want to get some help. Thank you.
Hello swati051!
Questions similar to yours can already be found at:
We have closed your question to allow us to keep similar content in the same thread.
If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.
Cheers!