Chrom3d Bead color
"...each bead represents a genomic domain" thats what i read in Nature post about the Chrom3d. But i couldnt find anything about which domain is each color?
chip-seq
• 1,360 views
•
link
written
by
dimitrischat
21
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Reading gam files within code
written by guntul 4How to read a gam and vg file in C++ code. I think libvgio is for this but I couldnt find how to do it
-
Can anyone share me a good GATK4 workflow
written by Ambu Vijayan 3Can anyone share me a good GATK4 workflow, I Couldnt find anything good that explanins the process in a crisp and easy way.
-
how to compare two ppi databases ?
written by muntadhar.zahid 0hi there, I am new to bioinformatic topics, i have a homework about comparing two protein protein interaction databases (e.g. nodes namber interactions) for only …
-
Given a protein domain, like a TPR or zinc finger or some other one, can you predict what RNA seque…
written by Joel Wallenius 22Hello! Question in the title. I am trying to find out if there is a tool somewhere that takes a protein sequence or structure and …
-
How to understand this kind of heatmap
written by Proxy Agent 0Hello everyone! I am quite confused by a heatmap (like fig a in the following picture), cause I don't understand what does it's coordinates means, …
-
IGV color interpretation by insert size
written by komal.rathi 411Hi everyone, I am looking at RNAseq data in IGV. I have colored the reads by insert size: https://ibb.co/mMwPKk I am not sure what the …
-
Map genetic mutations to protein domain or structure with a higher resolution than UniProt
written by ejoffe 2I would like to map genomic alterations and their associated amino acid changes to the structural domains of the affected proteins. For example, for mutations …
-
Retrieve protein domain coordinates given a protein/transcript ID
written by Lalla 5Hi! I have a list of ensembl transcript and protein IDs and I want to find the coordinates of the protein domains of these proteins. …
-
What is trace in R's heatmap.2 function?
written by NHEJ 36Very simply, what is the best way to understand what the trace feature represents (which adds a line to the middle of each column when …
-
Difference Between Ensmble Biomart Expression Filters: 'Egenetics/Sanbi Est Anatomical System Data'…
written by morteza.mahmoudisaber 8<p>i'm using biomart to filter a series of genes which are specifically expressed in the brain. in biomart there are two such filters, 'eGenetics/SANBI EST …
it would be nice to include a link ...
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1146-2
You want to know what domain each color represents on the Nature Protocols paper, or do you want to know what the colors represents in general? There are several color schemes, and they may also be defined by the user.