single base resolution count at the genome level
I am trying to get the single base resolution bedgraph file at the genome level . do you know how to do that? in fact, I have DNAseq data and trying to get the read count per base per gene.
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alireza346 •
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Hello alireza346!
We believe that this post does not fit the main topic of this site.
Please use google and the search function. This has been asked many times before. Look for genomecov (bedtools) or bamCoverage (deeptools). For the latter, check the -bs parameter.
For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.
If you disagree please tell us why in a reply below, we'll be happy to talk about it.
Cheers!
PER_BASE_COVERAGEparameter