I've been given a sequence to analyse I've determined the longest ORF amino acid sequence, and done a blast to see similar proteins of that sequence.
I now want to compare domains of my longest ORF amino acid sequence and the most similar protein. I planned to use Pfam to search for similar domains but you can only insert for accession numbers which I don't have for my longest ORF. I have one for my protein I want to compare it with, so I could use Pfam for that.
How would I identify domains from only an amino acid sequence with no accession number
(Apologies if this is a basic question i'm fairly new to bioinformatics)
Thank you :)
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written
by
jamie_cooper2341 •
1 answer
Think I've gone to proceed with the use of https://prosite.expasy.org/ in comparing domains.
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