Off topic:Reformatting Fasta Files
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5.5 years ago
Gritz122 • 0

Hi I would like to know the awk command for changing

>AY156743.1 HIV-1 clone P.ENV from USA envelope glycoprotein (env) gene, partial cds
TCAATTACTGGTAAATGGCAGTCTAGCAGAAGAAGARGTAGTAATTAGATCTGAAAATTTCACGAACAAT
GCTAAAAYCATAATAGTACAGCTGAAAGAMCCTGTAGAAATTAATTGTACAAGACCCAACAACWATACAR
G.....

to

>AY156743_P
TCAATTACTGGTAAATGGCAGTCTAGCAGAAGAAGARGTAGTAATTAGATCTGAAAATTTCACGAACAAT
GCTAAAAYCATAATAGTACAGCTGAAAGAMCCTGTAGAAATTAATTGTACAAGACCCAACAACWATACAR
G.....

or simply deleting:

ENV from USA envelope glycoprotein (env) gene, partial cds

thanks

FASTA Files Awk • 583 views
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