I have a list of nucleotide fasta sequences which has to be compared to another list of nucleotide sequences and output which two sequences are an exact match without any gaps or mismatches.
>query1 sequence >query2 sequnce >query3 sequence
>subject1 sequence >sub2 sequence >sub3 sequence
query2 == sub3
I want to know, if the solution already exists, if not how shall I approach it