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Tools to calculate binned Dxy?

Hi all,

Are there any tools that can calculate binned Dxy? I have found some that are capable of calculating per site Dxy, such as ANGSD. Any suggestions would be appreciated.

An offshoot of this question - what's the best way to stay informed about latest developments in genomic analysis tools?

Best,

GG

dxy snp genome r
• 4,027 views • link
written by ggman ggman

Thanks, much appreciated!

• 1 views • link
written by ggman ggman

what's the best way to stay informed about latest developments in genomic analysis tools?

Follow blogs, follow the BioStars "Tools" section, peruse the Bioinformatics section from BioRxiv.

There are some twitter bots which shout out about bioinfo tools, but I don't follow those - some people do and find them useful.

What do you mean by "binned Dxy"? Dxy over fixed-size windows?

• 1 views • link
written by h.mon h.mon

Yes, fixed-window sizes.

• 1 views • link
written by ggman ggman

Right, those take calculate it per site as opposed to fixed windows.

• 1 views • link
written by ggman ggman

There are some sliding-window sections, doesn't they help?

• 1 views • link
written by h.mon h.mon

I think those are only for Fst and Pi, unless if I am misreading them.

• 1 views • link
written by ggman ggman

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