Can I visualize individual genes of pathways when running goanna or kegga?
Hi,
I was running kegga and goana as follows:
> kegga.de=kegga(lrt, species="Mm")
> go <- goana(lrt, species= 'Mm')
> v <- topGO(go, n=100)
For both, the output is a list of pathways that show a number of upregulated, downregulated, or unchanged genes. See below:
Is there any simple way to visualize which of the genes are actually up or down in these pathways? I have previously used the Desktop version of GSEA by the Broad Institute, which allows nice visualization of these things.
Thank you!
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