Hi finswimmer,
Thank you for the warning. I appreciate your concern. I understand that excel is not the right tool for NGS study. My main intention to open/visualize tabular file is to check the DESeq result and filter out the differentially expressed gene. I also want to filter out the top 10 or 20 or 50 upregulated and downregulated genes. Furthermore, I would like to do GO (Gene Ontology) enrichment using GOseq. Kindly suggest a tool to study such tabular files. Thank you.
try importing it just the way you import a tab separated file in excel and also post few lines from example file, from next time Glory Basumata
Hi all, Thanks for the instructions. I will try this.
@Pierre: I like the cartoon icon :) Will try opening the file in R instead.
Look at this post to see a live example of what Excel does to some gene names.
Hi All, Thank you for your responses to my question. I am sharing the DESeq2 result output file so that you could try opening it. I am trying to filter out top 10 to 50 genes which are either upregulated or downregulated for this file.
Link to file: https://drive.google.com/file/d/1ItlSqE8jH645z_REd2gc_oVJo6_CaHPf/view?usp=sharing
Hello Glory Basumata ,
you should better start a new thread for this as it doesn't fit to your original question. But before doing it, try to solve this by yourself as this is a trivial task with unix commands
sortandheadortail.fin swimmer
Hey can you please tell me how did you open the .tabular file in R or excel?
What have you tried? Did you check with a simple
read.table?