Biostars beta testing.
Question: Triangle heatmap with heatmap.2
0
Entering edit mode

Hi! How can I have a triangle heatmap (upper or lower) with heatmap.2 without disturbing the clustering?

Entering edit mode
0

Something like a corrplot?

ADD REPLYlink 17 months ago
Buffo
♦ 1.6k
Entering edit mode
0

Yes. But corrplot's problem is, the data must range from -1 to 1. In addition, I need dendrogram in my heatmap.

ADD REPLYlink 17 months ago
Poorya Parvizi
• 40
Entering edit mode
0

Have you searched the WWW? By only having a triangular heatmap, you would be excluding many data-points from which the very cluster dendrograms that you want to include would have been produced. You may need to be more specific. Have you seen some plot in a publication?

I can think how I would go about doing this via the pairs() functionality, but it's not a rudimentary task.

ADD REPLYlink 17 months ago
Kevin Blighe
43k

Login before adding your answer.

Similar Posts
Loading Similar Posts
Powered by the version 2.0