How to get PDB IDs for many fasta sequences?
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Pymol superimposition by python script
written by iamsmor •
-
Can I traverse/enumerate PDB one at a time using a Python script without downloading all of them to…
written by user366312 •
-
Split and store fasta sequences in a specific directory (Perl)
written by Damian_Civ •
-
extraction upstream sequence of precursor microrna
written by najibveto •
-
Retreive associated DOI from PDB
written by Joe
-
How to get the PDB ID of a viral protein?
written by kschaf012 •
-
Downloading fasta sequences for PDB IDs in bulk
written by amruta.biotech •
-
retrieving fasta files from pdb, code
written by fareehakanwal90 •
-
GO terms associated to a list of genes
written by ncl.lazzarini
-
Sub-Record Indexing Of Fasta Files In Python?
written by interfect •
You could do blast searches at NCBI and use PDB database to search against. You could also do the search locally if you have blast+ installed.
An alternative to blast would be HHPred too. This gives you PDB IDs as well as the relevant chains etc.