how to get genomic position from protein pdb ID+AA residue position within the protein
Hi,
We sequence trios at our lab, and we would like to check if any of the variants lie within protein-protein interaction sites. I found this database called PiSite, a database for protein-protein interaction sites.
For such sites, I can get the AA residues position within a protein, in addition to the protein PDB ID.
With this information in hand, how is it possible to get the genomic position of those specific AA residues ? anyone aware of programming libraries that can help in this case?
The solution I came up with is to download multiple databases and translate coordinates from one database to the other.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Aminoacids range of protein domains in PDB structures
written by Jimpix •
-
Protein sequence from a gene fusion?
written by bioinf_sci •
-
In string database how to get the protein interaction for the query(multiple protein sequences) acr…
written by suvethamagudapathi •
-
Maestro (Schrodinger Software), Protein Data Bank,
written by Ready2Rapture •
-
Getting Protein Residues From Chromosomal Coordinates
written by giriduh •
-
Protein-Protein Interaction After Mutation
written by Jean-Paul Abbuehl •
-
Statistical Significance Of Sequence-Based Descriptor Data
written by Spyros •
-
Searching For Proteins That Have Similar Type Of Residues In Binding Pocket
written by Flow
-
Residue Contact Map - Program And/Or Database
written by Lyco
-
Which Downloadable Database Of Pdb Ligand Binding Sites Would You Recommend?
written by Jan Kosinski
