In string database how to get the protein interaction for the query(multiple protein sequences) across all the chromosomes
The interaction network that I expect to get while using multiple protein sequences as query in String database is interaction with the proteins in the whole dataset of Oryza sativa but the interaction network that I get is within that particular chromosome of the protein sequences that I have given as query. How to resolve this problem? But when single protein sequence is given as query then the interaction network formed is across the whole chromosome.
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Jean-Karim Heriche
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suvethamagudapathi •
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suvethamagudapathi •
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It's probably displaying "interaction" types you're not interested in. If using the web interface, go to settings and select physical network as network type and/or remove interaction sources you're not interested in, e.g. co-occurrence and neighbourhood.