Hello everyone, do you maybe know if there is a tool available for taxonomic identification of NGS reads (Linux)? Meaning that short paired-end reads would …
Hello, Could someone please suggest where I can obtain a list of hg19 microsatellite instability regions that are important in different tumor types. Thank you.
Hello, Could someone please suggest a tutorial or explain how to run bioinformatics tools via docker. I have docker installed on linux ubuntu but struggling …
Hello, Could someone please suggest optimum TopHat parameters to analyze Ion Torrent targeted RNA data. I need to identify the breakpoints and also unaligned reads …
Hello, Could someone please suggest a good way to align an unaligned Ion Torrent .ubam files containing RNA reads, so we could identify the breakpoints …
I am assuming you looked at MSI Sensor? https://github.com/ding-lab/msisensor
yes, but it's not working well with IonTorrent single-end targeted data. Thanks