Direct vs Indirect annotation
Can somebody please explain to me what is direct and indirect annotation of a term or gene in GO(Gene Ontology) DAG(Directed Acyclic Graph) with the help of some concrete examples?
gene ontology
• 2,160 views
•
link
written
by
nkhan.mscs15seecs •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Software for Gene ontology enrichment graph
written by yepeh72919 •I have the following gene enrichment from a ChIP-seq experiment. The highest p-values are not from the GO database, but from other databases like COSMIC, …
-
Direct vs Indirect annotations of a term in GO (Gene Ontology) Database
written by nkhan.mscs15seecs •Reference to the [Paper](https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7454750&tag=1). Following concepts are introduced. 1. For a particular protein a number of terms are retrieved from the GO(Gene Ontology) Database. 2. …
-
P-value calculation for Gene Ontology Terms
written by nkhan.mscs15seecs •In many studies like [This(Table1)][1] I have seen p-values are calculated for Gene Ontology Terms. Can somebody give me numerical calculation using a small example …
-
What is an indirect interaction in a drug-protein interaction database?
written by kakukeshiDear colleagues, Can somebody please explain to me what is considered an indirect interaction in a database such as STITCH or Matador? and what is …
-
Repeated occurrence of a Gene Ontology term in WEGO output
written by Prakki RamaHi, could anyone help me know why I see a GO term output more than once in the WEGO gene ontology output? Also, I do …
-
How to find GO file and do GO enrichment analysis ?
written by jackI have list of differentially expressed gene for paramecium tetraurelia. I want to do gene ontology enrichment analysis. there are two problem: 1) I couldn't …
-
How to visualize a large number of GO terms in directed acyclic graphs
written by oussumenten •Hi, I have a list of about 500 GO terms that I want to visualize in directed acyclic graphs so as to figure out their …
-
Gene Ontology Go Recall Calculation Tool
written by nevena.veljkovic •I need to propagate a set of predicted GO terms to the root of the Gene Ontology Directed Acyclic Graph (DAG) and to calculate recall. …
-
A Tree Viewer Software For The Gene Ontology Terms?
written by davidechicco •I have some lists of gene annotation come from the Gene Ontology. Every annotation is a coupling `<gene, feature>` where the feature is a Gene …
-
Generating A Gene Ontology Network For Cytoscape
written by jav.cdp •<p>Hello. I need help using cytoscape. I have a list of genes of interest that I use as input in STRING 9.0. Then I download …
You asked a question on this topic a few days back: Direct vs Indirect annotations of a term in GO (Gene Ontology) Database
Instead of posting a new question you should edit the old question so it gets bumped back on the main page. This question may be closed unless you clarify how this one is different from the post referenced above.
You are absolutely right. I also want this question be closed.