Mauve export similarity

I am using Mauve multiple genome alignment tool v20150226 to align two fasta files. The GUI displays a line graph.

enter image description here

I think the line graph denotes a measure of similarity of that region in one sequence to the other. Is there some way to export this similarity measure as a text file? I would like to modify it and import that into IGV as a bedGraph.

multiple-sequence-alignment mauve

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updated 3.2 years ago by Ram

• written 8.0 years ago by firestar

Mauve should have given you an XMFA file of the alignment I think?

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written 8.0 years ago by Joe

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