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genome sequence look up tool

Is there a tool to look up genomic sequences? Something in python would be most helpful. For example something like this:

>>>getseq('chr1'.'100500','100505')
AACTGC
sequence genome
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updated by h.mon h.mon • written by evcon • evcon

search this site for "samtools faidx" and the related python libraries (pyfaidx)

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written by Pierre Lindenbaum Pierre Lindenbaum

Thanks! This is perfect! Knew this had to exist already.

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written by evcon • evcon

1 answer

BioPython and pyfaidx in python, samtools on the command-line

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written by h.mon h.mon

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