Filter variants based on multiple condition
I have four vcf files (two patient and two control samples). I want to select variants present in either one of the patient and not in controls samples.
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Hello ifudontmind_plzz!
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@Pierre, i assume bcftools isec -c all A.vcf.gz B.vcf.gz C.vcf.gz D.vcf.gz, gives variants in A and B but not in C and D. But i would like to have variants in A OR B but not in C & D. Any suggestions?
do multiple calls to bcftools.