This is a test version of Biostars. For the public version, visit https://www.biostars.org.
how to download from IEDB with "host" information?

Hi, From IEDB, I want to download all the linear epitope , and then sort them based on the host type.However, I can't find any information about host in the CSV file I download from IEDB. Therefore, could anyone tell me how to get this "host type" information from IEDB?

iedb

Is parent organism in column N equivalent to host?

I believe not. For in the parent organism column, I find "Vaccinia virus" , "Influenza A virus" and more I believed not host name.

1 answer

It looks like you have to export data from search tabs individually. When I click on Assays tab (and then appropriate sub tab, t-cell, b-cell) and export data from there, the host information is included in column AH.

This works.Thanks for your reply!

Log in to answer this question.