Where do I execute STRIDE (http://webclu.bio.wzw.tum.de/stride/) ?
I'm a beginner and I am unable to find out how to execute the source code of STRIDE. Also, how do I get the output in form of text files? Thanks a bunch!
• 1,404 views
•
link
updated
by
Biostar
•
written
by
jananir1339 •
•
written
by
jananir1339 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Write free text comment with @CO in BAM file
written by mhasa006
-
search multiple sequences in multiple fastqs
written by max_19
-
How can I use formatted output file in the following code?
written by wowzero •
-
retrieving data from Pubmed by RISmed package in R
written by saber mohammadi •
-
Sample .sam file
written by torkel.loman •
-
Allele count for SNPs
written by apocalyps52 •
-
Retriving the base and its quality from fastq file
written by SJ Basu •
-
How Do I Run Stride For Multiple Files?
written by alianwar •
-
Megablast, Makembindex, And Choosing Nmers
written by Semenko •
-
Where Do I Find The 16S Rdna Reference Sequences (Metagenomics)
written by datablaze •
Stride source code is C, so one has to first compile it into a binary executable, and then execute. The Stride web page provides quite clear and simple instructions on how to compile its source.
Stride outputs to stdout, but you can output to a file with
-fFilename. All this is explained in the manual.should the input file contain only the atomic co-ordinates or can it be the native PDB files we download from RCSB?