Where do I execute STRIDE (http://webclu.bio.wzw.tum.de/stride/) ?
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5.8 years ago

I'm a beginner and I am unable to find out how to execute the source code of STRIDE. Also, how do I get the output in form of text files? Thanks a bunch!

proteins • 992 views
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Stride source code is C, so one has to first compile it into a binary executable, and then execute. The Stride web page provides quite clear and simple instructions on how to compile its source.

Stride outputs to stdout, but you can output to a file with -fFilename. All this is explained in the manual.

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should the input file contain only the atomic co-ordinates or can it be the native PDB files we download from RCSB?

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