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SJ Basu
SJ Basu
Reputation:
60
Joined:
11.8 years ago
Last seen:
5.5 years ago
Location:
India

Computatinal biologist at Tata Translational Cancer Research Center. I work on NGS data of mainly leukemia samples for translational research. I believe communication, collaboration and perseverance is how you progress in science. 

Latest posts by user
0 votes
1 reply
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Comment: C: confusion with GSEA result with custome gene set
written by SJ Basu • SJ Basu
0 votes
3 replies
1.4K views
confusion with GSEA result with custome gene set
rna-seq enrichment gsea
written by SJ Basu • SJ Basu
0 votes
2 replies
1.9K views
Resolving expression profiles of genes with same name but different MSTRG ID
differential-gene-expression rna-seq stringtie
updated by Ram Ram • written by SJ Basu • SJ Basu
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0 replies
1.1K views
oncoSNP stops run giving MATLAB function error
snp snp-array array oncosnp matlab
written by SJ Basu • SJ Basu
0 votes
0 replies
1.4K views
Processing RNA-seq expression for inter sample classification
rna-seq stringtie classification dge
written by SJ Basu • SJ Basu
0 votes
1 reply
0 views
Comment: C: Too low FPKM values from StringTie
written by SJ Basu • SJ Basu
0 votes
2 replies
0 views
Comment: C: Too low FPKM values from StringTie
written by SJ Basu • SJ Basu
0 votes
1 reply
0 views
Comment: C: Too low FPKM values from StringTie
written by SJ Basu • SJ Basu
0 votes
8 replies
4.6K views
Too low FPKM values from StringTie
rna-seq stringtie new tuxedo
written by SJ Basu • SJ Basu
0 votes
0 replies
1.3K views
variant calling using data from HaloPlex HS
snp targetted sequencing haloplex hs agilent
written by SJ Basu • SJ Basu
1 vote
1 reply
0 views
Answer: A: mapping rate of small rna-seq with different references
written by SJ Basu • SJ Basu
0 votes
0 replies
1.7K views
characterizing a plasmid genome
plasmid plasmid genome microbiology ngs
written by SJ Basu • SJ Basu
0 votes
0 replies
0 views
Comment: C: Calculating the gene coverage in StringTie
written by SJ Basu • SJ Basu
0 votes
0 replies
0 views
Comment: C: Calculating the gene coverage in StringTie
written by SJ Basu • SJ Basu
0 votes
0 replies
0 views
Comment: C: Low reads mapping in methylation sequencing
written by SJ Basu • SJ Basu
0 votes
2 replies
1.9K views
Low reads mapping in methylation sequencing
medip mapping
updated by Chris Miller Chris Miller • written by SJ Basu • SJ Basu
2 votes
4 replies
8.8K views
Calculating the gene coverage in StringTie
rna-seq stringtie coverage gene
updated by geo.pertea • geo.pertea • written by SJ Basu • SJ Basu
0 votes
1 reply
0 views
Comment: C: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
written by SJ Basu • SJ Basu
0 votes
1 reply
2.4K views
KEGG Ontology terms depiction/statistics
rna-seq metatranscriptome kegg pathway ko term
updated by Jean-Karim Heriche Jean-Karim Heriche • written by SJ Basu • SJ Basu
0 votes
0 replies
1.7K views
discrepancy in two known miRNA results in miRDeep2
rna-seq mirna mirdeep2
written by SJ Basu • SJ Basu
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TODO: Awards