Dear Biostar users.
Hello I had pre-processing using GATK 126.96.36.199 version.
My NGS data was made of exome captured (Whole exome data).
I have a question.
When I do baserecalibrator, shoud I use target intervals that is exome region ?
I checked GATK4 preprocessing. But I can't find comment about baserecalibrator and exome region.