GATK4 BaseRecalibrator and Target region (whole exome data)
Dear Biostar users.
Hello I had pre-processing using GATK 4.0.2.1 version.
My NGS data was made of exome captured (Whole exome data).
I have a question.
When I do baserecalibrator, shoud I use target intervals that is exome region ?
I checked GATK4 preprocessing. But I can't find comment about baserecalibrator and exome region.
Thanks.
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oghzzang •
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