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GATK4 BaseRecalibrator and Target region (whole exome data)
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13 months ago
oghzzang • 40

Dear Biostar users.

Hello I had pre-processing using GATK 4.0.2.1 version.

My NGS data was made of exome captured (Whole exome data).

I have a question.

When I do baserecalibrator, shoud I use target intervals that is exome region ?

I checked GATK4 preprocessing. But I can't find comment about baserecalibrator and exome region.

Thanks.

GATK4 BQSR • 739 views
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