MEGAN branches support
when a taxonomic assignment is made in MEGAN, the branches of the tree may have statistical support such as bootstrap or probability
sequencing
next-gen
• 1,246 views
•
link
updated
by
GenoMax
16K
• |
written
by
genomebiomex
0
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to import a phylogenetic tree (in nexus format) with node support values in R
written by diversitree 1I have a phylogenetic tree in nexus format that has bootstrap support values. I want to plot this tree in R with the support values …
-
Advice on publishing maximum likelihood trees
written by weedy23 8Hi, I am relatively new to phylogenetic analyses so I have a simple question. I have done a multi-species maximum likelihood analysis in Garli. I …
-
Problem with getting branch support for phylogenetic tree
written by mdsiddra 3I have used python 3.6 and biopython 1.72 for viewing phylogenetiv trees. I have a protein msa file and a resulting tree file from the …
-
MrBayes tree in RAxML
written by F.I.2011 1Hi, I am new in Phylogenetics and therefor asking naive question. Can I use tree generated in MrBayes in RAxML to get Bootstrap support or …
-
I only get three bootstrap values to my phylogenetic tree
written by metamorphosesgirl 0Hi, I used Mega7 to make a phylogenetic tree, I made a maximum likelihood and a neighbour joining tree, I tested for approx. 100 bootstraps, …
-
Adding Character Support to branches of tree
written by cs4 0Hello, I'm creating trees in PAUP* using a character matrix and parsimony, but I'd like to include the bootstrap score and the number of characters …
-
Problem with Megan 5 to read biom data from qiime
written by huangxiaomiao3 0Dear All, I'm an amateur in bioinformatics. I am learning to use qiime for processing my 454 sequencing data. I followed the qiime online tutorial …
-
Phylogenetic tree construction with RAxML and low bootstrap values
written by vasilislenis 16Hello everybody, I have assembled the mitochondrial genome of 8 sheep individuals and now I am trying to construct the phylogenetic tree. I have also …
-
SEED assignment (MEGAN5)
written by fhsantanna 62For me it is not clear how MEGAN assign the SEED classes to the sequences. In the manual, it says that it is made throughtout …
-
Best Way To Check Topology Support For A Phylogenetic Tree
written by Pappu 210<p>I made phylogenetic tree using FastTree of an alignment ~2000 protein sequences. I am willing to know how the topology support for the branches can …
What is the question?
can you put support the branches of the tree that obtain with MEGAN?