Entering edit mode
6.0 years ago
Za
▴
140
Hi,
I don't know why I can't sort my bam files
dhcp179185:unknown$ samtools sort SRR1593424.bam SRR1593424_sorted
[bam_sort] Use -T PREFIX / -o FILE to specify temporary and final output files
Usage: samtools sort [options...] [in.bam]
Options:
-l INT Set compression level, from 0 (uncompressed) to 9 (best)
-m INT Set maximum memory per thread; suffix K/M/G recognized [768M]
-n Sort by read name
-t TAG Sort by value of TAG. Uses position as secondary index (or read name if -n is set)