question about 10x genomics output: filtered_gene_bc_matrices versus raw_gene_bc_matrices
Hi
I am newbie in single cell RNA-seq. I have ouput of 10x genomics. I wonder what the difference is between
"filtered_gene_bc_matrices" and "raw_gene_bc_matrices"?
Thanks
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dppb05 •
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just3.just5 •
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just3.just5 •
1 answer
According to the 10X documentation:
- raw_gene_bc_matrices: Contains every barcode from fixed list of known-good barcode sequences. This includes background and non-cellular barcodes.
- filtered_gene_bc_matrices: Contains only detected cellular barcodes.
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