As it is in post title, Is it possible to get .bed file of sequenced regions after NGS experiment? I mean that you have results of NGS experiment, let's take WES of 6 samples. Than I'd like to generate .bed file with regions of sequenced regions.
To be honest I need this to generate opportunity matrix which is created from those regions:
Unfortunately I didn't recieve any of .bed files from the company that performed the experiment. All I got are .bam's.
In addition to this, can I take regions of coding sequences from UCSC's table browser?
Best regards, Adam