Getting transcriptomic coordinates for CDS exons from a GTF

Hi,

Is there an R package/function that given a GTF file (or in a data.frame) can return a data.frame where each row is a CDS exon and its start and end coordinates relative to the spliced transcript?

gtf bed

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written 8.3 years ago by rubic

Possible duplicate of Mapping between genomic coordinates to transcriptomic coordinates and [Solved] Trying to apply mapToTranscripts to data.table by row, getting incorrect amount of values

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written 5.7 years ago by opplatek

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