SRA tootkit to download pileup formats using SRR accessions
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6.0 years ago
Paul ▴ 80

Is there a way I could directly download pileup format using SRR accession number ?

I have list of SRR accesion IDs for which I directly want the pileup format. I have downloaded SRA-toolkit to use SRA-pileup tool, but not sure of getting a pileup format using SRR ID.

Please suggest..

next-gen sequencing sratoolkit pileup • 1.2k views
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I think that may only be for accessions where submitters uploaded an aligned BAM file. Otherwise you will have to do the pileup yourself after alignments.

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