Entering edit mode
6.1 years ago
BAGeno
▴
190
Hi,
I am new to CNVnator. I have install this tool after many problem. I run following command without any error. But I did not see any output root file.
./cnvnator /path_to_genome/hg19.fa -root /media/linux/Output.root -chrom chr22 -tree /media/linux/Input.bam
Is there something wrong with my command? Also can anyone please tell me can we run cnvnator with whole reference genome or we have to run separately, for every chromsome.
