will do, thanks a lot
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garbanyo •
any fast PRINSEQ alternative?
Hi all, I'm writing a C++ version of PRINSEQ to filter and trim fastq files and I want to do some timing/memory usage comparison with other sequencing QC tools. Is there any tool beside FastQC, Fastx toolkit and the perl version of PRISEQ that I should include?
Thanks a lot
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milad eidi •
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garbanyo •
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garbanyo •
2 answers
Have a look at fastp
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WouterDeCoster
bbduk.sh from BBMap suite. Java but multi-threaded and plenty fast for me.
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