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failed to generate a circular plot which links collinear genes within a gene family with red curved lines using family_circle_plotter.java script in McscanX toolkit

Hi, I am trying to use family_circle_plotter.java script in MCscanx to generate a circular plot which links all collinear genes within a gene family with red curved lines. I was able to generate a circular plot but with no red curved lines in it. could someone suggest the probable reason for it?

software error
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updated by Biostar Biostar • written by annapragada.harika • annapragada.harika

1 answer

I am able to rectify this issue by changing the format of the gene family file which is actually a tab delimited file.

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written by annapragada.harika • annapragada.harika

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