TBTools for synteny analysis in a gene family

Dear biostars community,

I am trying to run TBTools for synteny analysis of a gene family. Everything ran fine until the "Quick run MCScanX Wrapper" step, i am getting "0" collinear genes. Is that possible? FYI, I have used the genome protein file for the blast. Looking forward for your help. Thank you for your time.

Best
Chanderkant

mcscanx synteny gene-family tbtools

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updated 3.1 years ago by Daniela HH •

• written 3.9 years ago by ChanderKant (CK) Chaudhary •

I'm having the exact same problem. Have you perhaps managed to fix it yet?

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written 3.1 years ago by Daniela HH •

0 answers

No answers yet.

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