Are there any similar alternatives to VEP and wAnnovar to annotate and postprocess a human genome Illumina VCF?

vep wannovar annotation human genome vcf

• 1,870 views • link

updated 8.5 years ago by Pierre Lindenbaum 17K • | written 8.5 years ago by mathisdead 1

1 answer

snpeff http://snpeff.sourceforge.net/

• 0 views • link

written 8.5 years ago by Pierre Lindenbaum 17K

More posts like this

Generating wANNOVAR output with ANNOVAR
written 3.7 years ago by paolo 7

I have written an R-script for prioritizing variants which uses a file annotated by wANNOVAR as input. But since wANNOVAR can not annotate VCF files …
VEP: MSG: ERROR: Cannot use format vcf without Bio::DB::HTS::Tabix module installed
written 5.0 years ago by Filago 11

Hello everybody, I want to annotate a VCF file with vep (v. 104). I installed VEP and everything works fine. However, when using the --custom …
How to combining VEP and VCF in one file
written 6.2 years ago by MAPK 214

I was provided a VCF file and a snp-annotated VEP output file separately. I know VEP tool can annotate VCF by adding consequence field of …
Annotate hs37d5 genome calls using VEP
written 6.3 years ago by igor 0

I have genome sequencing data in vcf format that I would like to annotate using VEP. The genomic variants were called against the hs37d5 reference …
What web services can annotate and postprocess a complete human genome VCF coming from Illumina Tru…
written 8.5 years ago by mathisdead 1

What web services can annotate and postprocess a human genome VCF coming from Illumina Tru-seq machine? Have a whole genome SNP/indel discovery VCF from the …
What software is designed to do human identity analysis applying CODIS and other panels of forensic…
written 8.5 years ago by mathisdead 1

What software is designed to do human identity analysis applying CODIS and other panels of forensically relevant genome biomarkers? I have found only the products …
Are there any STR and other forensic genomics references packages to use them for alignment against…
written 8.5 years ago by mathisdead 1

Are there any STR and other forensic genomics references packages to use them for alignment against a complete genome of a suspect? I have a …
Is it possible to run VEP on a merged VCF file derived from a 30 VCFs from the separate reference g…
written 8.5 years ago by mathisdead 1

Is it possible to run VEP on a merged VCF file derived from a 30 VCFs from the separate reference gene alignments? And is there …
How to further process and annotate VCF files derived from mapping a patient`s whole genome FASTQs …
written 8.5 years ago by mathisdead 1

How to further process and annotate VCF files derived from mapping a patient`s whole genome FASTQs to a separate genes GenBank (.gbk) files? I have …
Are there any human genome variant callers and BAM indexing and sorting tools to run on Windows 10?
written 8.6 years ago by mathisdead 1

Are there any human genome variant callers and BAM indexing and sorting tools to run on Windows 10? I run Pilon, but it asks to …