Hello everyone! I searched the forum but coundn`t find a question that is like mine I have a multisample annotated VCF file (with dbNSFP plugin) …

I tried to use built-in databases and build my own (snpEff), however, in both cases, not all my variants are annotated with Allele Frequency (AF). …

Hi everyone, I'm having trouble annotating a VCF with SnpSift and the dbnsfp option. From the documentation, running: java -jar SnpSift.jar dbnsfp -v -db path/to/db …

Hi everyone, I am using bcftools to filter variants from a VCF file. The variants from this VCF file have been annotated using ANNOVAR. I …

Hi, I annotated my VCF files using snpEff by creating new database (I use own assembly and gtf file). I would like also to calculate …

hi there, I am trying to annotate WGS VCF files through VEP, and even on multi-threading (n=8) the process is painfully slow. The VCF sizes …

Hi Friends, I already have two VCF files generated using SAMtools (susceptible and tolerant) of Heavea (only draft genome is available and it is not …

Hello, recently I have been visiting other labs abroad and I saw, that they are using software called VarSeq (by GoldenHelix) for filtering variants. It …

<p>Hi there,</p> <p>I want to add CADD for the variant annotation, and easily directed to dbNSFP. According to its official site (https://sites.google.com/site/jpopgen/dbNSFP), dbNSFP has integrated …

<p>I'm trying to develop a script to annotate a VCF file with functional predictions and scores from dbNSFP. dbNSFP is distributed as large tab de-limited …