More posts like this
-
How to Obtain a GMT File for Pathway Enrichment Analysis in Gallus gallus Metabolomics Data?
written by DareDevilHello everyone, I am currently working on metabolomics data for Gallus gallus and I am interested in performing pathway enrichment analysis. I would like to …
-
KEGG discrepancy between reactions present in different organism-specific pathways
written by karin.hrovatin •It seems that some KEGG reactions are present in certain organism-specific pathways, but not in others (e.g. not marked as present in the organism). For …
-
Create a tree with ontogenetic relationships between mammalian tissues
written by Natasha •I have come across a study that shows ontogenetic relationships between mammalian tissues. Ref : [Similar Gene Expression Profiles Do Not Imply Similar Tissue Functions][1] …
-
Comparing the gene expression data from the experiments performed using same platform
written by Natasha •Hi All, Recently, I was going through some of the posts on how to compare the gene expression data, obtained from microarray experiments, reported in …
-
Protein Atlas programmatic access
written by Natasha •Hello Everyone, Can we access [PROTEIN ATLAS][1] using REST API? Is there any way to programmatically access the contents in Protein Atlas? I would like …
-
Accessing UNIPROT using REST API
written by Natasha •Hello Everyone, I would like to programmatically access the entries(uniprot id,entry name,protein name,gene name,kinetics) for a given EC Number and organism of interest, using python. …
-
Transcription factor of a gene (Humans)
written by Natasha •Hello Everyone, I am trying to find the transcription factor,of the gene PFKL, which binds to the regulatory region of the DNA. PFKL is the …
-
Allosteric regulation of enzyme
written by Natasha •Hi All, I am trying to gain some insight on the allosteric regulation of enzymes.For example,in the glycolysis pathway , allosteric regulation occurs only in …
-
Annotate unknown reaction from known reactants
written by Miche •Hi all, Apologies if this is a repeated question. I have an annotated genome (RAST) but I am missing some reactions. The bacterium I am …
-
Mapping Bigg Metabolic Reaction Ids To Kegg Pathway Map Ids
written by Bernie •<p>I would like to superimpose metabolic flux balance analysis results on <a href="http://www.genome.jp/kegg-bin/show_pathway?scale=0.5&query=&map=eco01100">KEGG pathway maps</a> and would like to know if there is a way …
That depend how the XML file is structured. Can you give us the first lines of the XML?
Many thanks for the reply.The XML file has been generated from COPASI. Please find the content of the XML file here- link
You may find SBML coverters here. Also in the Copasi manual are a couple of web services mentioned.