Getting just fastqc.zip file?
I am new user in RNA-seq data, I am trying to do fastqc analysis with Linux, but when I run fastqc command on my data it gives me only fastqc.zip file and not .html file or anything else to see plots.
fastqc -t 8 -o Raw-data/RNA-seq/qc/ Documents/S22_L001_R1_001.fastq
1 answer
Unzip the zip file, you will have html file called fastqc_report.html inside.
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vinay.rs •
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Please, insert your command line to your post, to find out what's going on
I want to perform fastQC on my data.Do you use fastQC software for doing it?
Yes, You can either use it on command line or use the graphical user interface.
See if this is applicable: FastQC not making html output report.
Also make sure you are running fastqc in non-interactive mode. If you are using interactive-mode/GUI then follow these directions to save a report in html.
unable to open the zip
use unzip tool to unzip the zip file.