Gene expression analysis

Question

[gladnovin]

Hi,

I started to work with GEO datasets on Hodgkin Lymphoma(R programming) . I found all the differential expressed genes . But i would like to use another ML algorithm for better understanding. Or is it possible to show survival analysis for the same dataset?? Or any other ideas to work with this dataset?

[Jean-Karim Heriche]

Could you precise what you're trying to do ? Is there a particular question you're trying to address ?

[gladnovin]

Hi , I had started working on Microarray analysis using GEO dataset(I used GSE541547). I found the differential expressed genes, using Heatmaps . The ML algorithm used in heatmaps is Hierarchial clustering. I want use another ML algorithm eg SOM , or some other algorithms which could predict differentially expressed genes .The programming language which I am using here is R. I am beginner and CS student, I want more ideas of how to work with these datasets after Hierarchial clustering?