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Info (Secondary structure and solvent accessibility) from DSSP
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2.8 years ago
@fabri.digua44933

Hi to all! I'm a computer science student (i know nothing about chemistry...) and I am developing a neural network for solvent accessibility prediction from the secondary structure of protein, using the ICML2014 dataset (https://www.princeton.edu/~jzthree/datasets/ICML2014/). I have also to rebuild the dataset by the pdb files.. i have converted the pdb in DSSP, but now i really don't understand how to extract the secondary structure and the solvent accessibility informations, in the same form of the ICML2014 dataset.. anyone can help me?

Thanks, FD

dssp pdb solvent accessibility protein python • 496 views
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