ChIP-seq output to FPKM

Question

[Clara]

I have ChIP-seq output (after doing processing with peakAnnotator) and I want to obtain the expression levels of input and the other 2 samples.

How can I have it? It's possible?

[ATpoint]

First of all, expression refers to RNA-seq. ChIP-seq gives you the position of DNA-associated proteins. Second, with that sparse information, no one can help you. What kind of data do you have, what preprocessing did you do and what is the question you want to answer?

[WouterDeCoster]

There is no need to remove a thread, certainly not after you received helpful feedback.