How to go from proteome of species A and compare genes to species B · Biostar

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How to go from proteome of species A and compare genes to species B

I have a transcriptome of a parasite (B) and want to do a dN/dS analysis. I have downloaded the FASTA file of the proteins for the parasite (A) I wish to compare mine with. I know I must use the proteome of A to find orthologs, but I am confused of how to use my transcriptome to find the orthologs since I do not have the proteome of B nor is it available online.

rna-seq orthologous pairs orthomcl proteome dn/ds

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updated 6.8 years ago by Biostar

• written 8.5 years ago by hudak7 •

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