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Create a BED restriction digest file in HiC-Pro

Hi, I am trying to create a BED file in HiCPro containing all the restriction fragments created by DpnII. I have loaded the hg19.fasta file in the annotation folder. When I run the command HiC-Pro_2.10.0/bin/utils/digest_genome.py -r dpnii -o hg19_dpnii.bed hg19.fasta I get the following error message: No such file or directory

What's going wrong? I would appreciate your help.

hic chromosome conformation capture hic pro
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updated by Francis • Francis • written by rahman.samir33 • rahman.samir33

1 answer

You can try change the dpnii to DpnII.

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written by Francis • Francis

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