Estimate Fragment Size from Single End ChipSeq with (pysam, htseq lib or deeptools API)

I was wondering how to Estimate Fragment Size from bamfile directly in my code using some libraries cited in title . Some functions might already exists somewhere I suppose...Peak caller MACS does that. (d value) but I'd like to reproduce it by myself.

deeptools pysam htseq

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written 8.5 years ago by ZheFrench

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