Entering edit mode
6.3 years ago
bright602
▴
50
Hi there, I got a fasta file which looks like below, and I also have a list of genes (DDB0234326, DDB0182333, etc). Could someone give me some suggestions on how to extract the sequences according to the gene list?
Thanks a lot for your help in advance!
>DDB0190058|JC1V2_0_00886|1|-1|2161867|2162448
ATCTAAAAAAAAAAAATATCAAAAATTTAAGAGTTTTAATAAATTATATGGATAATCATTATTATTATATTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTTATATGTGGTATTTAATATTTAAAAAATATTTTGTTTGTTTTTATTT
GTTTTTTGTTATTTTTTTATCCTTTTATCTTTTTATTTTTGTTTTTTTTTTTAGTTCTAATTTTATCTTTTTTCTTTCTT
TTGTTATTTTTTATAAAAAAAAAAAATAAAAATAAAAATAAAAAAAAAATAAAAATAAAAAAAAAATAAAAATAAAAATA
AAAATTTGAAAAAAAAAATAAAAATTATTTCAAATTTGCTATTATTTCAAATATTCCACGAAATCATGAAATAATCAAAA
ATATCTCAAGTGATTTTTTTTTTTTTGTTTTGCTGAAAAAAAAAAATTATTTTTACTTTTTTTTTTTTATTTTCATTTTT
CTTTTTTTAAAATAATAATAGTAGTAAAAGAAATAAAAATAAAAAAATAAAAAAAAAAATAACCATAAACAAATAATAAT
AATAATAAAAAAATTTATTTCC
>DDB0190067|JC1V2_0_00895|1|-1|2192202|2192651
ACTGGTTATAAAAAAAAAAAAAAAAAAAAACAGAATGATTACATTCATTTTTTTTTTTTTATATCATTTTGTGTATTTTG
ATTACTCTATATTTATGTTATTTTATTCAATAAAAAAAAATTCCATTATTTTTTTTAGAAATTTAAGTTATTATTTTTTT
TTTTTTTTTTTGTATTTTCATTGGTTGGTTGGTTGTTTTATTAATTTTTAAAATGAGATTTTAACTGAAAAAAAAAAAAA
AAAATATCTTTTCTTCGATTTGCATTATAATTTAATTTTTTTTTTTTTTTTTTTTTATTTTTTTTAAATTTTTCTTGATT
TTGGGAGAGATTTATGATTAAATTTAATTTTTAATTTTTTTTTTTTTTTTTTGATGATAATTAAATTTTTTTTTACAATT
TATAAAAAAAAAAAAAAACTATTTATTTATTATAAAAAAAAAATAAAAAA
>DDB0190069|JC1V2_0_00897|1|1|2193205|2194305
TTTTTTTTTTTTAATGAATGAAATTTTTTTTTTTTATGATTTAAATAAAAATTTAATTTTACTATAATCAAAATAAAAAT
AAATAAAAAAAACTAAATAAAATAAATTTAAAATAGATCACCCAATACTTTAGTGAATATTTTTTTTTTTTTTTTTTTTT
TTAAAAAATAATTTGTTTTATTTTAATTTAATTTTTTTGTTTTGTTAATTTTATCACAAATAAATGTACAACAAAATAAC
ACCACTTTTTTCTGTGCACACCTTACCAAATTAAATGAAAATTACAAAAAGGGAAGAAAATAACAGTTTGTTAAAAAAAA
ATATATATATTTTAAAATTTAATTATTATTTTTTTTTTCCTTTTTGTTCCATTTTAATATTATTTTTTATATCCAATTCA
