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Comparision of R packages in RNA-Seq

Hello Bioinformaticians! I'm quite a novice in Bioinformatics. I'm a bit wondering that if the packages of R for one use(e.g. alignment) are the same, or some of them are better? For example, for alignment, are there some packages superior than others?

rna-seq next-gen r
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updated by Joseph Hughes Joseph Hughes • written by Qingyang Xiao Qingyang Xiao

There are a LOT of papers comparing tools out there. Have you searched the literature?

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written by Devon Ryan Devon Ryan

1 answer

I would recommend reading the following: https://www.ncbi.nlm.nih.gov/pubmed/28680106 and associated pipelines on github

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written by Joseph Hughes Joseph Hughes

Nice recommendation. Many thanks!

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written by Qingyang Xiao Qingyang Xiao

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