Should create plots like this need help.
• 0 views
•
link
written
by
arunsaikirans •
Plots in R using phyloseq
Hi all, I am trying to create barplots for my metagenomic data via R and phyloseq, I should create plots of a single specified genus or species for all my samples. Could any one explain how to create this using R code???
Thanks Kiran
• 4,191 views
•
link
written
by
arunsaikirans •
1 answer
• 0 views
•
link
written
by
arunsaikirans •
Log in to answer this question.
More posts like this
-
Difference in relative abundance between MicrobiomeDB and r phyloseq
written by benkosta •
-
How to plot LD decay per chromosome
written by Curls •
-
Heatmap plot with ChIP-seq signal.
written by bobia9193 •
-
How can I get lefse output for a single taxonomy level (e.g. species) only?
written by dpc
-
cropped and incomplete "genus" stacked barplot generated with R
written by dpc
-
how to use output of cnvkit to plot
written by guofengwang123 •
-
Box plot for single gene expression for various samples in a given condition ( male/female)
written by vkgaur25 •
-
What is the input file for kraken to create krona plots?
written by arunsaikirans •
-
Names are not identical in mapping file and the otu file.
written by arunsaikirans •
-
Interpreting CummeRbund Expression plots
written by benjyrolls
Hi
genus_Thiobacillus = subset_taxa(BTM, Genus == "g__Thiobacillus")
myplot <- plot_bar(genus_Thiobacillus ,"X.SampleID", fill = "Specie")