Hi all
I have WGS for snps analysis the quality of bases and GC content for all my 3 samples are good No adapter sequence fail reported in fastqc library was prepared with NEB adapters But still i am getting fail and warning with Kmer and tile
How should i tackle this or is it fine to ignore it if it is WGS sequence for snps data analysis
Sample1_1 tile and kmer
Sample1_2 tile and kmer
Sample2_1 kmer
Sample2_2 kmer
Sample3_1 tile
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analytical •
What is the result in the over-represented sequences section? - I'm guessing you'll see some overrepresented sequences that once removed will fix the kmer problem
No Overrepresented sequence were found in my data all the data. Also if tiles has this issues will it not create problem while calling SNPS or Indel?
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